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A Genome-wide Combinatorial Strategy Dissects Complex Genetic Architecture of Seed Coat Color in Chickpea
The study identified 9045 high-quality SNPs employing both genome-wide GBS- and
candidate gene-based SNP genotyping assays in 172, including 93 cultivated (desi and
kabuli) and 79 wild chickpea accessions. The GWAS in a ...
Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea
A rapid high-resolution genome-wide strategy for molecular mapping of major QTL(s)/gene(s) regulating important agronomic traits is vital for in-depth dissection of complex quantitative traits and genetic enhancement in ...
A genome-scale integrated approach aids in genetic dissection of complex flowering time trait in chickpea
A combinatorial approach of candidate gene-based association analysis and genome-wide association study (GWAS) integrated with QTL mapping, differential gene expression profiling and molecular haplotyping was deployed in ...
Genome-Wide Scans for Delineation of Candidate Genes Regulating Seed-Protein Content in Chickpea
Identification of potential genes/alleles governing complex seed-protein content (SPC) is essential in marker-assisted breeding for quality trait improvement of chickpea. Henceforth, the present study utilized an integrated ...
A chickpea genetic variation map based on the sequencing of 3,366 genomes
Zero hunger and good health could be realized by 2030 through effective conservation, characterization and utilization of germplasm resources1. So far, few chickpea (Cicer arietinum) germplasm accessions have been characterized ...
Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species
The transcription factor, DREB2A, is one of the promising candidate genes involved in dehydration tolerance in crop plants. In order to isolate DREB2A homologues across cereals (rice, barley and sorghum) and legumes (common ...
A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea
We identified 44844 high-quality SNPs by sequencing 92 diverse chickpea accessions belonging to a seed and pod trait-specific association panel using reference genome- and de novo-based GBS (genotyping-by-sequencing) assays. ...
A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea
High experimental validation/genotyping success rate (94–96%) and intra-specific polymorphic potential
(82–96%) of 1536 SNP and 472 SSR markers showing in silico polymorphism between desi ICC 4958 and
kabuli ICC 12968 ...
Genome-wide conserved non-coding microsatellite (CNMS) marker-based integrative genetical genomics for quantitative dissection of seed weight in chickpea
Phylogenetic footprinting identified 666 genome-wide paralogous and orthologous CNMS (conserved non-coding microsatellite) markers from 5′-untranslated and regulatory regions (URRs) of 603 protein-coding chickpea genes. ...
Genome-wide development and deployment of informative intron-spanning and intron-length polymorphism markers for genomics-assisted breeding applications in chickpea
The discovery and large-scale genotyping of informative gene-based markers is essential for rapid delineation
of genes/QTLs governing stress tolerance and yield component traits in order to drive genetic
enhancement in ...