Genome wide association analysis for stripe rust resistance in barley seedlings and adult plant stage in India
Date
2017-04-07Date Issued
2017-04-07Author(s)
Citation
Andrea Visioni, Sanjaya Gyawali, Rajan Selvakumar, Prakash Gangwar, P. S. Shekhawat, Subhash Chand Bhardwaj, Ayed Al-Abdallat, Ramesh Pal Singh Verma. (7/4/2017). Genome wide association analysis for stripe rust resistance in barley seedlings and adult plant stage in India. Rabat, Morocco.
Abstract
Barley stripe rust (Puccinia striiformis f. sp. hordei, PSH) occurs worldwide and is a major fungal
disease in barley in Southern Asia. In order to identify and the estimate effects of loci underlying
quantitative resistance to PSH, an association mapping panel of 261 barley genotypes consisting
of released cultivars, advanced lines, differentials, and local landraces from the ICARDA barley
breeding program and from North and South America, Europe, and Australia was screened for
seedling and adult plant resistances to barley stripe rust. Seedling resistance evaluations were
undertaken for 261 barley genotypes with the five prevalent PSH races, 0 (5S0), 24 (0S0-1), 57
(0S0), M (1S0), and G (4S0), individually at ICAR-IIWBR Shimla. The field screening was
performed in two different locations, Durgapura (Rajasthan, India) in 2013 and 2014, and at Karnal
(Haryana, India) in 2014 under artificial inoculation using a mixture of the five PSH races. The
panel was genotyped with the DaRT-Seq high-throughput genotyping platform. The final markers
sets used for this work comprises 13,182 PAV and 6,311 SNPs. Results of genome-wide
association scans, using the PAV marker set, showed positive associations with resistance to PSH
for both seedlings stage and adult plant stages. We identified 49 significant marker-trait
associations corresponding to 32 QTL located across the seven barley chromosomes for stripe rust
resistance at seedlings stage for the five races. A total of 21 significant marker trait associations
resulting in 6 QTL were identified on all chromosomes except 7H for adult plant resistance.
Common QTL for resistance to different races of PSH resistance at seedling stage were found on
chromosomes 4H and 5H. For adult plant resistance we found a QTL on the long arm chromosome
5H stable across environments and years. Performing GWAS, using the SNP marker set we found
42 significant associations corresponding to 20 QTL, located on the seven barley chromosomes
for seedling resistance for the five PSH races. For resistance at field screening, 17 positive
associations corresponding to 10 QTL located on chromosomes 1H, 2H, 3H, 5H and 7H were
found. The QTL detected in this study will be useful for future PSH resistance breeding efforts in
the India and in other countries.
Author(s) ORCID(s)
Visioni, Andreahttps://orcid.org/0000-0002-0586-4532
Verma, Ramesh Pal Singhhttps://orcid.org/0000-0002-2621-2015
Subject(s)
AGROVOC Keywords
Click to enable
Related items
Showing items related by title, author, creator and subject.
-
Title: The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project
Author(s)Hudson, Lawrence N.; Newbold, Tim; Contu, Sara; Hill, Samantha; Lysenko, Igor; De Palma, Adriana; Phillips, Helen; Alhusseini, Tamera; Bedford, Felicity; Bennett, Dominic; Booth, Hollie; Burton, Victoria; Chng, Charlotte; Choimes, Argyrios; Correia, David L. P.; Day, Julie; Echeverria-Londono, Susy; Emerson, Susan; Gao, Di; Garon, Morgan; Harrison, Michelle; Ingram, Daniel; Jung, Martin; Kemp, Victoria; Kirkpatrick, Lucinda; Martin, Callum D.; Pan, Yuan; Pask-Hale, Gwilym; Pynegar, Edwin; Robinson, Alexandra; Sanchez-Ortiz, Katia; Senior, Rebecca; Simmons, Benno; White, Hannah; Zhang, Hanbin; Aben, Job; Abrahamczyk, Stefan; Adum, Gilbert; Aguilar-Barquero, Virginia; Aizen, Marcelo; Albertos, Belén; Alcala, E.; del Mar Alguacil, Maria; Alignier, Audrey; Ancrenaz, Marc; Andersen, Alan; Arbeláez-Cortés, Enrique; Armbrecht, Inge; Arroyo-Rodríguez, Víctor; Aumann, Tom; Axmacher, Jan; Azhar, Badrul; Azpiroz, Adrián; Baeten, Lander; Bakayoko, Adama; Báldi, András; Banks, John; Baral, Sharad; Barlow, Jos; Barratt, Barbara; Barrico, Lurdes; Bartolommei, Paola; Barton, Diane; Basset, Yves; Batáry, Peter; Bates, Adam; Louhaichi, Mounir; Katovai, Eric; Kellner, Klaus; Kessler, Michael; R Kirby, Kathryn; E Knight, Mairi; Knop, Eva; Koivula, Matti; Kolb, Annette; Kone, Mouhamadou; Korosi, adam; Krauss, Jochen; J. Fonte, Steven; Fournier, Anne; E Fowler, Robert; Franzen, Markus; H Fraser, Lauchlan; M. Fredriksson, Gabriella; B Freire Jr, Geraldo; L. M. Frizzo, Tiago; Furlani, Dario; Gaigher, Rene; U Ganzhorn, Jorg; P. Garcia, Karla; C. Garcia R, Juan; G. Garden, Jenni; Garilleti, Ricardo; Ge, Bao-Ming; Gendreau-Berthiaume, Benoit; J. Gerard, Philippa J. Gerard; Gheler-Costa, Carla; Gilbert, Benjamin; Giordani, Paolo; Giordano, Simonetta; Golodets, Carly; G. L. Gomes, Laurens; K. Gould, Rachelle; Goulson, Dave; Granjon, Laurent; Grass, Ingo; L. Gray, Claudia; Grogan, James; Guardiola, Moises; R Gunawardene, Nihara; G Gutierrez, Alvaro; L Gutierrez Lamus, Doris; H Haarmeyer, Daniela; E Hanley, Mick; R Hashim, Nor; N. Hassan, Shombe; G. Hatfield, Richard; E. Hawes, Joseph; W Hayward, MattDate: 2017-12-31Type: Journal ArticleStatus: Open accessThe PREDICTS project—Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)—has collated from published studies a large, reasonably representative database of comparable samples ... -
Title: Adapting Agriculture to Climate Change: A Synopsis of Coordinated National Crop Wild Relative Seed Collecting Programs across Five Continents
Author(s)Eastwood, Ruth; Tambam, Beri B.; Aboagye, Lawrence M; Akparov, Zeynal; Aladele, Sunday E.; Allen, Richard G.; Amri, Ahmed; Anglin, Noelle; Araya, Rodolfo; Espinoza, Griselda Arrieta; Asgerov, Aydin; Awang, Khadijah; Awas, Tesfaye; Barata, Ana Maria; Boateng, Samuel Kwasi; Brehm, Joana Magos; Braidy, Joelle; Breman, Elinor; Angulo, Arturo Brenes; Burle, Marília L.; Álvarez, Nora P. Castañeda; Casimiro, Pedro; Chaves, Nestor; Clemente, Adelaide S; Cockel, Christopher; Davey, Alexandra; De la Rosa, Lucía; Debouck, Daniel; Dempewolf, Hannes; Dokmak, Hiba; Ellis, David; Faruk, Aisyah; Freitas, Cátia; Galstyan, Sona; García, Rosa M; Ghimire, Krishna H; Guarino, Luigi; Harker, Ruth; Hope, Roberta; Humphries, Alan W; Jamora, Nelissa; Jatoi, Shakeel Ahmad; Khutsishvili, Manana; Kikodze, David; Kyratzis, Angelos C.; Lobos, Pedro León; Liu, Udayangani; Mainali, Ram P; Mammadov, Afig T.; Manrique, Norma; Manzella, Daniele; Ali, Mohd Shukri Mat; Medeiros, Marcelo B; Guzman, María A. Mérida; Pantsulaia, Tsira Mikatadze; Mohamed, El Tahir Ibrahim; Altamirano, Álvaro Monteros; Morales, Aura; Muller, Jonas V; Mulumba, John; Nersesyan, Anush; Nobrega, Humberto; Nyamongo, Desterio; Obreza, Matija; Okere, Anthony U; Orsenigo, Simone; Klose, Fernando Ortega; Papikyan, Astghik; Pearce, Timothy R; Pinheiro de Carvalho, Miguel A. A.; Prohens, Jaime; Rossi, Graziano; Salas, Alberto; Singh, Deepak; Siddiqui, Sadar Uddin; Smith, Paul P; Sotomayor, Diego A; Tacán, Marcelo; Tapia, César; Toledo, Álvaro; Toll, Jane; Vu, Dang Toan; Dang Vu, Tuong; Way, Michael J; Yazbek, Mariana; Zorrilla, Cinthya; Kilian, BenjaminDate: 2022-07-13Type: Journal ArticleStatus: Open accessThe Adapting Agriculture to Climate Change Project set out to improve the diversity, quantity, and accessibility of germplasm collections of crop wild relatives (CWR). Between 2013 and 2018, partners in 25 countries, heirs ... -
Title: Peer-Reviewed Literature on Grain Legume Species in the WoS (1980–2018): A Comparative Analysis of Soybean and Pulses
Author(s)Magrini, Marie-Benoit; Cabanac, Guillaume; Lascialfari, Matteo; Plumecocq, Gaël; Amiot, Marie Josephe; Anton, Marc; Arvisenet, Gaëlle; Baranger, Alain; Bedoussac, Laurent; Chardigny, Jean-Michel; Duc, Gérard; Jeuffroy, Marie-Hélène; Journet, Etienne-Pascal; Juin, Hervé; Larre, Colette; Leiser, Hugues; Micard, Valérie; Millot, Dominique; Pilet-Nayel, Marie-Laure; Nguyen-Thé, Christophe; Salord, Tristan; Voisin, Anne-Sophie; Walrand, Stephane; Wery, JacquesDate: 2019-12-02Type: Journal ArticleStatus: Open accessGrain-legume crops are important for ensuring the sustainability of agrofood systems. Among them, pulse production is subject to strong lock-in compared to soya, the leading worldwide crop. To unlock the situation and ...