dc.contributor | Kilian, Benjamin | en_US |
dc.contributor | Dreher, Kate | en_US |
dc.contributor | Amri, Ahmed | en_US |
dc.contributor | Bassi, Filippo | en_US |
dc.contributor | Boukar, Ousmane | en_US |
dc.contributor | Cook, Douglas | en_US |
dc.contributor | Cruickshank, Alan | en_US |
dc.contributor | Fatokun, Christian | en_US |
dc.contributor | El Haddad, Noureddine | en_US |
dc.contributor | Humphries, Alan | en_US |
dc.contributor | Jordan, David | en_US |
dc.contributor | Kehel, Zakaria | en_US |
dc.contributor | Agrawal, Shiv Kumar | en_US |
dc.contributor | Labarosa, Sandy Jan | en_US |
dc.contributor | Nguyen, Loi Huu | en_US |
dc.contributor | Mace, Emma | en_US |
dc.contributor | McCouch, Susan | en_US |
dc.contributor | McNally, Kenneth L. | en_US |
dc.contributor | Marshall, David F. | en_US |
dc.contributor | Mikwa, Erick | en_US |
dc.contributor | Milne, Iain | en_US |
dc.contributor | Odeny, Damaris | en_US |
dc.contributor | Plazas, Mariola | en_US |
dc.contributor | Prohens, Jaime | en_US |
dc.contributor | H. Rieseberg, Loren | en_US |
dc.contributor | Schafleitner, Roland | en_US |
dc.contributor | Sharma, Shivali | en_US |
dc.contributor | Stephen, Gordon | en_US |
dc.contributor | Quang Tin, Huynh | en_US |
dc.contributor | Togola, Abou | en_US |
dc.contributor | Warschefsky, Emily | en_US |
dc.contributor | Werner, Peter | en_US |
dc.contributor | Shaw, Paul | en_US |
dc.creator | Raubach, Sebastian | en_US |
dc.date.accessioned | 2020-10-22T20:58:57Z | |
dc.date.available | 2020-10-22T20:58:57Z | |
dc.identifier | https://mel.cgiar.org/reporting/download/hash/d507b280fe84b26ec1d478c242391429 | en_US |
dc.identifier.citation | Sebastian Raubach, Benjamin Kilian, Kate Dreher, Ahmed Amri, Filippo Bassi, Ousmane Boukar, Douglas Cook, Alan Cruickshank, Christian Fatokun, Noureddine El Haddad, Alan Humphries, David Jordan, Zakaria Kehel, Shiv Kumar Agrawal, Sandy Jan Labarosa, Loi Huu Nguyen, Emma Mace, Susan McCouch, Kenneth L. McNally, David F. Marshall, Erick Mikwa, Iain Milne, Damaris Odeny, Mariola Plazas, Jaime Prohens, Loren H. Rieseberg, Roland Schafleitner, Shivali Sharma, Gordon Stephen, Huynh Quang Tin, Abou Togola, Emily Warschefsky, Peter Werner, Paul Shaw. (30/6/2020). From bits to bites: Advancement of the Germinate platform to support prebreeding informatics for crop wild relatives. Crop Science, pp. 1-29. | en_US |
dc.identifier.uri | https://hdl.handle.net/20.500.11766/11982 | |
dc.description.abstract | Management and distribution of experimental data from prebreeding projects
is important to ensure uptake of germplasm into breeding and research programs. Being able to access and share this data in standard formats is essential.
The adoption of a common informatics platform for crops that may have limited
resources brings economies of scale, allowing common informatics components
to be used across multiple species. The close integration of such a platform with
commonly used breeding software, visualization, and analysis tools reduces the
barrier for entry to researchers and provides a common framework to facilitate
collaborations and data sharing. This work presents significant updates to the
Germinate platform and highlights its value in distributing prebreeding data for
14 crops as part of the project ‘Adapting Agriculture to Climate Change: Collecting, Protecting and Preparing Crop Wild Relatives’ (hereafter Crop Trust Crop
Wild Relatives project) led by the Crop Trust (https://www.cwrdiversity.org). The
addition of data on these species compliments data already publicly available in
Germinate. We present a suite of updated Germinate features using examples
from these crop species and their wild relatives. The use of Germinate within the
Crop Trust Crop Wild Relatives project demonstrates the usefulness of the system
and the benefits a shared informatics platform provides. These data resources
provide a foundation on which breeding and research communities can develop
additional online resources for their crops, harness new data as it becomes available, and benefit collectively from future developments of the Germinate platform. | en_US |
dc.format | PDF | en_US |
dc.language | en | en_US |
dc.publisher | Wiley (12 months) | en_US |
dc.rights | CC-BY-NC-ND-4.0 | en_US |
dc.source | Crop Science;(2020) Pagination 1-29 | en_US |
dc.subject | prebreeding informatics | en_US |
dc.title | From bits to bites: Advancement of the Germinate platform to support prebreeding informatics for crop wild relatives | en_US |
dc.type | Journal Article | en_US |
dcterms.available | 2020-06-30 | en_US |
dcterms.extent | 1-29 | en_US |
cg.creator.id | Amri, Ahmed: 0000-0003-0997-0276 | en_US |
cg.creator.id | Bassi, Filippo: 0000-0002-1164-5598 | en_US |
cg.creator.id | Boukar, Ousmane: 0000-0003-0234-4264 | en_US |
cg.creator.id | Fatokun, Christian: 0000-0002-8428-7939 | en_US |
cg.creator.id | El Haddad, Noureddine: 0000-0001-8848-4799 | en_US |
cg.creator.id | Kehel, Zakaria: 0000-0002-1625-043X | en_US |
cg.creator.id | Agrawal, Shiv Kumar: 0000-0001-8407-3562 | en_US |
cg.creator.id | Togola, Abou: 0000-0001-6155-8292 | en_US |
cg.subject.agrovoc | crop wild relatives | en_US |
cg.contributor.center | International Center for Agricultural Research in the Dry Areas - ICARDA | en_US |
cg.contributor.center | International Crops Research Institute for the Semi-Arid Tropics - ICRISAT | en_US |
cg.contributor.center | International Institute of Tropical Agriculture - IITA | en_US |
cg.contributor.center | International Maize and Wheat Improvement Center - CIMMYT | en_US |
cg.contributor.center | The World Vegetable Center - AVRDC | en_US |
cg.contributor.center | University of California-Davis - UC Davis | en_US |
cg.contributor.center | Cornell University - CORNELL | en_US |
cg.contributor.center | University of Bonn - Uni-Bonn | en_US |
cg.contributor.center | International Rice Research Institute - IRRI | en_US |
cg.contributor.center | Global Crop Diversity Trust - GCDT | en_US |
cg.contributor.center | The James Hutton Institute - JHI | en_US |
cg.contributor.center | The University of British Columbia - UBC | en_US |
cg.contributor.center | South Australian Research and Development Institute - SARDI | en_US |
cg.contributor.center | University of Queensland - UQ | en_US |
cg.contributor.center | Scotland's Rural College - SRUC | en_US |
cg.contributor.center | Polytechnic University of Valencia - UPVAL | en_US |
cg.contributor.center | Can Tho University, Mekong Delta Development Research Institute - CTU - MDI | en_US |
cg.contributor.crp | CGIAR Research Program for Managing and Sustaining Crop Collections - Genebanks | en_US |
cg.contributor.funder | Global Crop Diversity Trust - GCDT | en_US |
cg.contributor.project | GCDT Safeguarding Crop Diversity Grasspea | en_US |
cg.contributor.project-lead-institute | International Center for Agricultural Research in the Dry Areas - ICARDA | en_US |
cg.contact | paul.shaw@hutton.ac.uk | en_US |
cg.identifier.doi | https://dx.doi.org/10.1002/csc2.20248 | en_US |
cg.isijournal | ISI Journal | en_US |
dc.identifier.status | Open access | en_US |
mel.impact-factor | 1.878 | en_US |
cg.issn | 0011-183X | en_US |
cg.journal | Crop Science | en_US |