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dc.creatorMamta, Sharmaen_US
dc.date2017-02-27en_US
dc.date.accessioned2017-02-27T13:57:23Z
dc.date.available2017-02-27T13:57:23Z
dc.identifierhttps://mel.cgiar.org/reporting/download/hash/6ITIr0O1en_US
dc.identifier.citationSharma Mamta. (27/2/2017). Re-sequencing of Foc isolates representing races to understand the pathogenicity mechanism.en_US
dc.identifier.urihttps://hdl.handle.net/20.500.11766/6051
dc.description.abstractTotal 56 isolates of Foc representing different races and locations in India where chickpea is grown has been used for the re-sequencing study. Raw data was subjected to filtration and correction steps using Trimmomatic v0.33, to reduce sequencing errors and get high quality data. The high quality reads obtained were aligned to Foc reference sequence (unpublished) using Bowtie2 v2.2.4 with default parameters. The alignment results in form of bam files were then used to calculate various alignment statistics like depth, coverage etc. Samples with lower alignment percentage (≤ 75%) were removed from analysis. Further, these bam files were adjusted for PCR duplicates and improved using Picard tools v1.119 and GATK v3.3. Further analysis is in progress.en_US
dc.formatDOCXen_US
dc.languageenen_US
dc.rightsCC-BY-4.0en_US
dc.titleRe-sequencing of Foc isolates representing races to understand the pathogenicity mechanismen_US
dc.typeReporten_US
cg.creator.idMamta, Sharma: 0000-0001-5745-4693en_US
cg.creator.ID-typeORCIDen_US
cg.subject.agrovocagricultureen_US
cg.contributor.centerInternational Crops Research Institute for the Semi-Arid Tropics - ICRISATen_US
cg.contributor.crpCGIAR Research Program on Grain Legumes - GLen_US
cg.contributor.funderNot Applicableen_US
cg.coverage.regionWestern Africaen_US
cg.coverage.regionSouthern Asiaen_US
cg.coverage.regionEastern Africaen_US
cg.coverage.countryBFen_US
cg.coverage.countryINen_US
cg.coverage.countryKEen_US
cg.coverage.countryNGen_US
cg.coverage.countryTZen_US
cg.contactmamta.sharma@CGIAR.ORGen_US
dc.identifier.statusOpen accessen_US


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