Estimation of inbreeding in Ethiopian goats using runs of homozygosity
Date
2016-07-01Date Issued
2016-07-01Author(s)
Citation
Wilson Nandolo, Maria Wurzinger, Gabor Meszaros, Curtis P. Van Tassell, Timothy Gondwe, Henry Mulindwa, Doreen Lamuno, Tesfaye Getachew, Solomon Guangul, Heather Huson, Jennifer Woodward-Greene, Aynalem Haile, Johann Sölkner. (1/7/2016). Estimation of inbreeding in Ethiopian goats using runs of homozygosity. Nitra, Slovakia.
Abstract
This study was carried out to estimate the inbreeding levels in Abergelle, Gumuz, Keffa and Woytoguji goats in Ethiopia from genomic information. A total of 161 animals (53 Abergelle, 39 Gumuz, 31 Keffa and 38 Woytoguji) were genotyped using the Illumina 50K SNP chip. Runs of homozygosity were computed at cut-offs of 1 Mb, 2 Mb, 4 Mb, 8 Mb and 16 Mb, using cgaTOH Analysis & Clustering Suite, Version 1.0.1. The estimated levels of inbreeding based on runs of homozygosity greater than 1 Mb were 0.0210, 0.0209, 0.0502 and 0.0199 for Abergelle, Gumuz, Keffa and Woytoguji, respectively. The results suggest that inbreeding levels are low in the four breeds, although relatively higher in the Keffa breed than in the other three breeds. Suitable strategies may need to be implemented for reducing inbreeding when designing breeding programmes for the Keffa goats.
Author(s) ORCID(s)
Getachew, Tesfayehttps://orcid.org/0000-0002-0544-6314
Haile, Aynalemhttps://orcid.org/0000-0001-5914-0487
AGROVOC Keywords
Click to enable
Related items
Showing items related by title, author, creator and subject.
-
Title: Adapting Agriculture to Climate Change: A Synopsis of Coordinated National Crop Wild Relative Seed Collecting Programs across Five Continents
Author(s)Eastwood, Ruth; Tambam, Beri B.; Aboagye, Lawrence M; Akparov, Zeynal; Aladele, Sunday E.; Allen, Richard G.; Amri, Ahmed; Anglin, Noelle; Araya, Rodolfo; Espinoza, Griselda Arrieta; Asgerov, Aydin; Awang, Khadijah; Awas, Tesfaye; Barata, Ana Maria; Boateng, Samuel Kwasi; Brehm, Joana Magos; Braidy, Joelle; Breman, Elinor; Angulo, Arturo Brenes; Burle, Marília L.; Álvarez, Nora P. Castañeda; Casimiro, Pedro; Chaves, Nestor; Clemente, Adelaide S; Cockel, Christopher; Davey, Alexandra; De la Rosa, Lucía; Debouck, Daniel; Dempewolf, Hannes; Dokmak, Hiba; Ellis, David; Faruk, Aisyah; Freitas, Cátia; Galstyan, Sona; García, Rosa M; Ghimire, Krishna H; Guarino, Luigi; Harker, Ruth; Hope, Roberta; Humphries, Alan W; Jamora, Nelissa; Jatoi, Shakeel Ahmad; Khutsishvili, Manana; Kikodze, David; Kyratzis, Angelos C.; Lobos, Pedro León; Liu, Udayangani; Mainali, Ram P; Mammadov, Afig T.; Manrique, Norma; Manzella, Daniele; Ali, Mohd Shukri Mat; Medeiros, Marcelo B; Guzman, María A. Mérida; Pantsulaia, Tsira Mikatadze; Mohamed, El Tahir Ibrahim; Altamirano, Álvaro Monteros; Morales, Aura; Muller, Jonas V; Mulumba, John; Nersesyan, Anush; Nobrega, Humberto; Nyamongo, Desterio; Obreza, Matija; Okere, Anthony U; Orsenigo, Simone; Klose, Fernando Ortega; Papikyan, Astghik; Pearce, Timothy R; Pinheiro de Carvalho, Miguel A. A.; Prohens, Jaime; Rossi, Graziano; Salas, Alberto; Singh, Deepak; Siddiqui, Sadar Uddin; Smith, Paul P; Sotomayor, Diego A; Tacán, Marcelo; Tapia, César; Toledo, Álvaro; Toll, Jane; Vu, Dang Toan; Dang Vu, Tuong; Way, Michael J; Yazbek, Mariana; Zorrilla, Cinthya; Kilian, BenjaminDate: 2022-07-13Type: Journal ArticleStatus: Open accessThe Adapting Agriculture to Climate Change Project set out to improve the diversity, quantity, and accessibility of germplasm collections of crop wild relatives (CWR). Between 2013 and 2018, partners in 25 countries, heirs ... -
Title: Peer-Reviewed Literature on Grain Legume Species in the WoS (1980–2018): A Comparative Analysis of Soybean and Pulses
Author(s)Magrini, Marie-Benoit; Cabanac, Guillaume; Lascialfari, Matteo; Plumecocq, Gaël; Amiot, Marie Josephe; Anton, Marc; Arvisenet, Gaëlle; Baranger, Alain; Bedoussac, Laurent; Chardigny, Jean-Michel; Duc, Gérard; Jeuffroy, Marie-Hélène; Journet, Etienne-Pascal; Juin, Hervé; Larre, Colette; Leiser, Hugues; Micard, Valérie; Millot, Dominique; Pilet-Nayel, Marie-Laure; Nguyen-Thé, Christophe; Salord, Tristan; Voisin, Anne-Sophie; Walrand, Stephane; Wery, JacquesDate: 2019-12-02Type: Journal ArticleStatus: Open accessGrain-legume crops are important for ensuring the sustainability of agrofood systems. Among them, pulse production is subject to strong lock-in compared to soya, the leading worldwide crop. To unlock the situation and ... -
Title: Minutes of high-level guidance not captured by the "pink Aide Memoire"
Author(s)Bassi, Filippo; Sanchez-Garcia, Miguel; Baum, MichaelDate: 2022-12-30Type: ReportStatus: Timeless limited accessCWANA Genetic Innovation and Regional CGIAR Initiatives consultation meeting with NARES to develop guiding principles up to 2030 for the development of genetic innovations targeted to the region, meeting in Turkiye, 13-15 ...