Genomic regions associated with herbicide tolerance in a worldwide faba bean (Vicia faba L.) collection
Date
2022-01-07ISI journal
Impact factor: 4.996 (Year: 2022)
Author(s)
Citation
Lynn Abou-Khater, Fouad Maalouf, Abdulqader Jighly, Alsamman Alsamman, Diego Rubiales, Nicolas Rispail, Jinguo Hu, Yu Ma, Rind Balech, Aladdin Hamwieh, Michael Baum, Shiv Kumar Agrawal. (7/1/2022). Genomic regions associated with herbicide tolerance in a worldwide faba bean (Vicia faba L. ) collection. Scientific Reports, 158.
Abstract
Weeds represent one of the major constraints for faba bean crop. The identification of molecular markers associated with key genes imparting tolerance to herbicides can facilitate and fasten the efficient and effective development of herbicide tolerant cultivars. We phenotyped 140 faba bean genotypes in three open field experiments at two locations in Lebanon and Morocco against three herbicide treatments (T1 metribuzin 250 g ai/ha; T2 imazethapyr 75 g ai/ha; T3 untreated) and one in greenhouse where T1 and T3 were applied. The same set was genotyped using genotyping by sequencing (GBS) which yield 10,794 high quality single nucleotide polymorphisms (SNPs). ADMIXTURE software was used to infer the population structure which revealed two ancestral subpopulations. To identify SNPs associated with phenological and yield related traits under herbicide treatments, Single-trait (ST) and Multi-trait (MT) Genome Wide Association Studies (GWAS) were fitted using GEMMA software, showing 10 and 14 highly significant associations, respectively. Genomic sequences containing herbicide tolerance associated SNPs were aligned against the NCBI database using BLASTX tool using default parameters to annotate candidate genes underlying the causal variants. SNPs from acidic endochitinase, LRR receptor-like serine/threonine-protein kinase RCH1, probable serine/threonine-protein kinase NAK, malate dehydrogenase, photosystem I core protein PsaA and MYB-related protein P-like were significantly associated with herbicide tolerance traits.
DSpace URI
https://hdl.handle.net/20.500.11766/66903Collections
- Agricultural Research Knowledge [12863]
Author(s) ORCID(s)
Maalouf, Fouadhttps://orcid.org/0000-0002-7642-7102
Hamwieh, Aladdinhttps://orcid.org/0000-0001-6060-5560
Baum, Michaelhttps://orcid.org/0000-0002-8248-6088
Agrawal, Shiv Kumarhttps://orcid.org/0000-0001-8407-3562
Subject(s)
AGROVOC Keywords
Click to enable
Related items
Showing items related by title, author, creator and subject.
-
Title: Adapting Agriculture to Climate Change: A Synopsis of Coordinated National Crop Wild Relative Seed Collecting Programs across Five Continents
Author(s)Eastwood, Ruth; Tambam, Beri B.; Aboagye, Lawrence M; Akparov, Zeynal; Aladele, Sunday E.; Allen, Richard G.; Amri, Ahmed; Anglin, Noelle; Araya, Rodolfo; Espinoza, Griselda Arrieta; Asgerov, Aydin; Awang, Khadijah; Awas, Tesfaye; Barata, Ana Maria; Boateng, Samuel Kwasi; Brehm, Joana Magos; Braidy, Joelle; Breman, Elinor; Angulo, Arturo Brenes; Burle, Marília L.; Álvarez, Nora P. Castañeda; Casimiro, Pedro; Chaves, Nestor; Clemente, Adelaide S; Cockel, Christopher; Davey, Alexandra; De la Rosa, Lucía; Debouck, Daniel; Dempewolf, Hannes; Dokmak, Hiba; Ellis, David; Faruk, Aisyah; Freitas, Cátia; Galstyan, Sona; García, Rosa M; Ghimire, Krishna H; Guarino, Luigi; Harker, Ruth; Hope, Roberta; Humphries, Alan W; Jamora, Nelissa; Jatoi, Shakeel Ahmad; Khutsishvili, Manana; Kikodze, David; Kyratzis, Angelos C.; Lobos, Pedro León; Liu, Udayangani; Mainali, Ram P; Mammadov, Afig T.; Manrique, Norma; Manzella, Daniele; Ali, Mohd Shukri Mat; Medeiros, Marcelo B; Guzman, María A. Mérida; Pantsulaia, Tsira Mikatadze; Mohamed, El Tahir Ibrahim; Altamirano, Álvaro Monteros; Morales, Aura; Muller, Jonas V; Mulumba, John; Nersesyan, Anush; Nobrega, Humberto; Nyamongo, Desterio; Obreza, Matija; Okere, Anthony U; Orsenigo, Simone; Klose, Fernando Ortega; Papikyan, Astghik; Pearce, Timothy R; Pinheiro de Carvalho, Miguel A. A.; Prohens, Jaime; Rossi, Graziano; Salas, Alberto; Singh, Deepak; Siddiqui, Sadar Uddin; Smith, Paul P; Sotomayor, Diego A; Tacán, Marcelo; Tapia, César; Toledo, Álvaro; Toll, Jane; Vu, Dang Toan; Dang Vu, Tuong; Way, Michael J; Yazbek, Mariana; Zorrilla, Cinthya; Kilian, BenjaminDate: 2022-07-13Type: Journal ArticleStatus: Open accessThe Adapting Agriculture to Climate Change Project set out to improve the diversity, quantity, and accessibility of germplasm collections of crop wild relatives (CWR). Between 2013 and 2018, partners in 25 countries, heirs ... -
Title: Peer-Reviewed Literature on Grain Legume Species in the WoS (1980–2018): A Comparative Analysis of Soybean and Pulses
Author(s)Magrini, Marie-Benoit; Cabanac, Guillaume; Lascialfari, Matteo; Plumecocq, Gaël; Amiot, Marie Josephe; Anton, Marc; Arvisenet, Gaëlle; Baranger, Alain; Bedoussac, Laurent; Chardigny, Jean-Michel; Duc, Gérard; Jeuffroy, Marie-Hélène; Journet, Etienne-Pascal; Juin, Hervé; Larre, Colette; Leiser, Hugues; Micard, Valérie; Millot, Dominique; Pilet-Nayel, Marie-Laure; Nguyen-Thé, Christophe; Salord, Tristan; Voisin, Anne-Sophie; Walrand, Stephane; Wery, JacquesDate: 2019-12-02Type: Journal ArticleStatus: Open accessGrain-legume crops are important for ensuring the sustainability of agrofood systems. Among them, pulse production is subject to strong lock-in compared to soya, the leading worldwide crop. To unlock the situation and ... -
Title: Minutes of high-level guidance not captured by the "pink Aide Memoire"
Author(s)Bassi, Filippo; Sanchez-Garcia, Miguel; Baum, MichaelDate: 2022-12-30Type: ReportStatus: Timeless limited accessCWANA Genetic Innovation and Regional CGIAR Initiatives consultation meeting with NARES to develop guiding principles up to 2030 for the development of genetic innovations targeted to the region, meeting in Turkiye, 13-15 ...