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dc.contributorKhan, Aamiren_US
dc.contributorSaxena, Rachiten_US
dc.contributorVanika, Gargen_US
dc.contributorVarshney, Rajeeven_US
dc.creatorKumar, Vinayen_US
dc.date2016-08-31en_US
dc.date.accessioned2017-04-11T09:01:57Z
dc.date.available2017-04-11T09:01:57Z
dc.identifierhttps://mel.cgiar.org/reporting/download/hash/t2dxFyt7en_US
dc.identifier.citationVinay Kumar, Aamir Khan, Rachit Saxena, Garg Vanika, Rajeev Varshney. (31/8/2016). First-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations. Plant Biotechnology Journal, 14 (8), pp. 1673-1681.en_US
dc.identifier.urihttps://hdl.handle.net/20.500.11766/6712
dc.description.abstractWhole genome re-sequencing (WGRS) was conducted on a panel of 20 Cajanus spp. accessions (crossing parentals of recombinant inbred lines, introgression lines, multiparent advanced generation intercross and nested association mapping population) comprising of two wild species and 18 cultivated species accessions. A total of 791.77 million paired-end reads were generated with an effective mapping depth of ~12X per accession. Analysis of WGRS data provided 5 465 676 genome-wide variations including 4 686 422 SNPs and 779 254 InDels across the accessions. Large structural variations in the form of copy number variations (2598) and presence and absence variations (970) were also identified. Additionally, 2 630 904 accession-specific variations comprising of 2 278 571 SNPs (86.6%), 166 243 deletions (6.3%) and 186 090 insertions (7.1%) were also reported. Identified polymorphic sites in this study provide the first-generation HapMap in Cajanus spp. which will be useful in mapping the genomic regions responsible for important traits.en_US
dc.formatPDFen_US
dc.languageenen_US
dc.publisherWiley Open Accessen_US
dc.rightsCC-BY-4.0en_US
dc.sourcePlant Biotechnology Journal;14,(2016) Pagination 1673,1681en_US
dc.subjectdeletionsen_US
dc.subjectinsertionsen_US
dc.subjectnextgeneration sequencingen_US
dc.subjectsingle-nucleotide polymorphismen_US
dc.subjectwhole genome re-sequencingen_US
dc.titleFirst-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populationsen_US
dc.typeJournal Articleen_US
cg.subject.agrovocagricultureen_US
cg.subject.agrovocpigeon peasen_US
cg.contributor.centerInternational Crops Research Institute for the Semi-Arid Tropics - ICRISATen_US
cg.contributor.centerThe University of Western Australia, Faculty of Science, School of Plant Biology - UWA - FoS - SoPBen_US
cg.contributor.crpCGIAR Research Program on Grain Legumes - GLen_US
cg.contributor.funderCGIAR System Organization - CGIARen_US
cg.coverage.regionSouthern Asiaen_US
cg.coverage.countryINen_US
cg.contactR.K.Varshney@CGIAR.ORGen_US
cg.identifier.doihttps://dx.doi.org/10.1111/pbi.12528en_US
dc.identifier.statusOpen accessen_US
mel.impact-factor6.305en_US


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