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dc.contributorSaxena, Maneesha S.en_US
dc.contributorKujur, Aliceen_US
dc.contributorDas, Shouviken_US
dc.contributorBadoni, Saurabhen_US
dc.contributorTripathi, Shaileshen_US
dc.contributorUpadhyaya, Hari D.en_US
dc.contributorGowda, C. L. L.en_US
dc.contributorSharma, Shivalien_US
dc.contributorSingh, Subeen_US
dc.contributorTyagi, Akhilesh K.en_US
dc.contributorParida, Swarup K.en_US
dc.creatorBajaj, Deepaken_US
dc.date2015-07-23en_US
dc.date.accessioned2017-05-15T18:37:43Z
dc.date.available2017-05-15T18:37:43Z
dc.identifierhttp://oar.icrisat.org/id/eprint/8898en_US
dc.identifierhttps://mel.cgiar.org/reporting/download/hash/bjQFIzIhen_US
dc.identifier.citationDeepak Bajaj, Maneesha S. Saxena, Alice Kujur, Shouvik Das, Saurabh Badoni, Shailesh Tripathi, Hari D. Upadhyaya, C. L. L. Gowda, Shivali Sharma, Sube Singh, Akhilesh K. Tyagi, Swarup K. Parida. (23/7/2015). Genome-wide conserved non-coding microsatellite (CNMS) marker-based integrative genetical genomics for quantitative dissection of seed weight in chickpea. Journal of Experimental Botany, 66 (5), pp. 1271-1290.en_US
dc.identifier.urihttps://hdl.handle.net/20.500.11766/7002
dc.description.abstractPhylogenetic footprinting identified 666 genome-wide paralogous and orthologous CNMS (conserved non-coding microsatellite) markers from 5′-untranslated and regulatory regions (URRs) of 603 protein-coding chickpea genes. The (CT)n and (GA)n CNMS carrying CTRMCAMV35S and GAGA8BKN3 regulatory elements, respectively, are abundant in the chickpea genome. The mapped genic CNMS markers with robust amplification efficiencies (94.7%) detected higher intraspecific polymorphic potential (37.6%) among genotypes, implying their immense utility in chickpea breeding and genetic analyses. Seventeen differentially expressed CNMS marker-associated genes showing strong preferential and seed tissue/developmental stage-specific expression in contrasting genotypes were selected to narrow down the gene targets underlying seed weight quantitative trait loci (QTLs)/eQTLs (expression QTLs) through integrative genetical genomics. The integration of transcript profiling with seed weight QTL/eQTL mapping, molecular haplotyping, and association analyses identified potential molecular tags (GAGA8BKN3 and RAV1AAT regulatory elements and alleles/haplotypes) in the LOB-domain-containing protein- and KANADI protein-encoding transcription factor genes controlling the cis-regulated expression for seed weight in the chickpea. This emphasizes the potential of CNMS marker-based integrative genetical genomics for the quantitative genetic dissection of complex seed weight in chickpea.en_US
dc.formatPDFen_US
dc.languageenen_US
dc.publisherOxford Academic Pressen_US
dc.rightsCC-BY-NC-4.0en_US
dc.sourceJournal of Experimental Botany ;66,(2015) Pagination 1271,1290en_US
dc.subjectsnpsen_US
dc.subjecttranscription factoren_US
dc.subjectcnmsen_US
dc.subjecteqtlsen_US
dc.subjectChickpeaen_US
dc.titleGenome-wide conserved non-coding microsatellite (CNMS) marker-based integrative genetical genomics for quantitative dissection of seed weight in chickpeaen_US
dc.typeJournal Articleen_US
cg.subject.agrovocplant genetic resourcesen_US
cg.subject.agrovoccicer arietinumen_US
cg.subject.agrovocseed weighten_US
cg.subject.agrovocmicrosatellitesen_US
cg.contributor.centerNational Institute of Plant Genome Research - NIPGRen_US
cg.contributor.centerIndian Council of Agricultural Research, Indian Agricultural Research Institute - ICAR-IARIen_US
cg.contributor.centerInternational Crops Research Institute for the Semi-Arid Tropics - ICRISATen_US
cg.contributor.crpCGIAR Research Program on Grain Legumes - GLen_US
cg.contributor.funderNot Applicableen_US
cg.coverage.regionSouthern Asiaen_US
cg.coverage.countryINen_US
cg.contactswarup@nipgr.ac.inen_US
cg.identifier.doihttps://dx.doi.org/10.1093/jxb/eru478en_US
dc.identifier.statusOpen accessen_US
mel.impact-factor5.677en_US


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