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Analysis of bisulfite sequenced data of hybrids and their parental lines
To understand the potential role of DNA methylation in heterosis, whole genome bisulfite sequencing and a comparative analysis of leading pigeonpea hybrid, ICPH 2740 and its parental lines ICPA 2047 and ICPR 2740 were ...
Identification of marker-trait associations for Fusarium wilt and sterility mosaic disease resistance
To map the target genomic region(s) for FW and SMD resistance, three bi-parental mapping populations consisting of 188 lines each were developed and designated as Pigeonpea Recombinant Inbred Line (PRIL) populations (PRIL_A, ...
Haplotype analysis of drought responsive genes in reference set
To perform the haplotype analysis of target candidate genes, available re-sequenced data of 292 lines of reference set was aligned to the reference pigeonpea genome (Varshney et al. 2012) using bwa aligner. Picard and GATK ...
Development and molecular characterization of 7, eight-way crosses to develop MAGIC population
A total of eight diverse founder parents (ICP 5529, HPL 24, ICP 7035, ICP 8863, ICP 4486, ICP 11605, ICP 7426 and ICP 14209) were selected for the development of MAGIC population. Half di-allele crossing approach (28, ...
QTL-seq analysis for identification of genomic regions associated with days to flowering
Days to fifty percent flowering is an important trait for development of early duration varieties.
Two parents ICP 5529 (late flowering-102 to 105 days) and ICP 11605 (early flowering-66 to 67 days) was selected for ...