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Analysis of bisulfite sequenced data of hybrids and their parental lines
To understand the potential role of DNA methylation in heterosis, whole genome bisulfite sequencing and a comparative analysis of leading pigeonpea hybrid, ICPH 2740 and its parental lines ICPA 2047 and ICPR 2740 were ...
Marker-trait association analysis for drought tolerance related traits using MAGIC lines
A total of 51.69 billion clean reads (90 bp) containing 4.65 TB clean data was generated on the MAGIC lines sequenced (including eight parental lines). On an average the sequencing depth on parental lines was 48x and 96% ...
Haplotype analysis of drought responsive genes in reference set
To perform the haplotype analysis of target candidate genes, available re-sequenced data of 292 lines of reference set was aligned to the reference pigeonpea genome (Varshney et al. 2012) using bwa aligner. Picard and GATK ...
QTL-seq analysis for identification of genomic regions associated with days to flowering
Days to fifty percent flowering is an important trait for development of early duration varieties.
Two parents ICP 5529 (late flowering-102 to 105 days) and ICP 11605 (early flowering-66 to 67 days) was selected for ...