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dc.contributoryao, Qiumingen_US
dc.contributorPatil, Gunvanten_US
dc.contributorAgarwal, Gauraven_US
dc.contributorDeshmukh, Rupeshen_US
dc.contributorWang, Biaoen_US
dc.contributorWang, Yongqinen_US
dc.contributorPrince, Silvas J.en_US
dc.contributorSong, Lien_US
dc.contributorXu, Dongen_US
dc.contributorYong-Qiang An, Charlesen_US
dc.contributorValliyodan, Babuen_US
dc.contributorVarshney, Rajeeven_US
dc.contributorNguyen, Henry T.en_US
dc.creatorChen, Weien_US
dc.date2016-07-19en_US
dc.date.accessioned2017-04-08T22:20:27Z
dc.date.available2017-04-08T22:20:27Z
dc.identifierhttp://oar.icrisat.org/id/eprint/9587en_US
dc.identifierhttps://mel.cgiar.org/reporting/download/hash/mrQqGSveen_US
dc.identifier.citationWei Chen, Qiuming yao, Gunvant Patil, Gaurav Agarwal, Rupesh Deshmukh, Biao Wang, Yongqin Wang, Silvas J. Prince, Li Song, Dong Xu, Charles Yong-Qiang An, Babu Valliyodan, Rajeev Varshney, Henry T. Nguyen. (19/7/2016). Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq. Frontiers in Plant Science, 07 (1044). pp. 1-19.en_US
dc.identifier.urihttps://hdl.handle.net/20.500.11766/6671
dc.description.abstractDrought and flooding are two major causes of severe yield loss in soybean worldwide. A lack of knowledge of the molecular mechanisms involved in drought and flood stress has been a limiting factor for the effective management of soybeans; therefore, it is imperative to assess the expression of genes involved in response to flood and drought stress. In this study, differentially expressed genes (DEGs) under drought and flooding conditions were investigated using Illumina RNA-Seq transcriptome profiling. A total of 2724 and 3498 DEGs were identified under drought and flooding treatments, respectively. These genes comprise 289 Transcription Factors (TFs) representing Basic Helix-loop Helix (bHLH), Ethylene Response Factors (ERFs), myeloblastosis (MYB), No apical meristem (NAC), and WRKY amino acid motif (WRKY) type major families known to be involved in the mechanism of stress tolerance. The expression of photosynthesis and chlorophyll synthesis related genes were significantly reduced under both types of stresses, which limit the metabolic processes and thus help prolong survival under extreme conditions. However, cell wall synthesis related genes were up-regulated under drought stress and down-regulated under flooding stress. Transcript profiles involved in the starch and sugar metabolism pathways were also affected under both stress conditions. The changes in expression of genes involved in regulating the flux of cell wall precursors and starch/sugar content can serve as an adaptive mechanism for soybean survival under stress conditions. This study has revealed the involvement of TFs, transporters, and photosynthetic genes, and has also given a glimpse of hormonal cross talk under the extreme water regimes, which will aid as an important resource for soybean crop improvement.en_US
dc.formatPDFen_US
dc.languageenen_US
dc.publisherFrontiers Mediaen_US
dc.rightsCC-BY-NC-4.0en_US
dc.sourceFrontiers in Plant Science;07 (1044).,(2016) Pagination 1,19en_US
dc.subjectsoybeanen_US
dc.subjectgeneexpressionen_US
dc.subjectrna-seqen_US
dc.subjectSoya beanen_US
dc.titleIdentification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seqen_US
dc.typeJournal Articleen_US
cg.subject.agrovocagricultureen_US
cg.subject.agrovocdroughten_US
cg.subject.agrovocfloodingen_US
cg.subject.agrovocstressen_US
cg.contributor.centerUniversity of Missouri - MU USAen_US
cg.contributor.centerInternational Crops Research Institute for the Semi-Arid Tropics - ICRISATen_US
cg.contributor.centerShanghai Jiao Tong Universityen_US
cg.contributor.centerUnited States Department of Agriculture, Agricultural Research Service - USDA-ARSen_US
cg.contributor.crpCGIAR Research Program on Grain Legumes - GLen_US
cg.contributor.funderNot Applicableen_US
cg.coverage.regionGlobalen_US
cg.contactpatilg@missouri.eduen_US
cg.identifier.doihttps://dx.doi.org/10.3389/fpls.2016.01044en_US
dc.identifier.statusOpen accessen_US
mel.impact-factor4.495en_US


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