Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

cg.contactR.K.Varshney@CGIAR.ORGen_US
cg.contributor.centerInternational Crops Research Institute for the Semi-Arid Tropics - ICRISATen_US
cg.contributor.centerInternational Maize and Wheat Improvement Center - CIMMYTen_US
cg.contributor.centerEthiopian Institute of Agricultural Research - EIARen_US
cg.contributor.centerIndian Council of Agricultural Research - ICARen_US
cg.contributor.centerEgerton Universityen_US
cg.contributor.centerInstitut de Recherche pour le Developpement - IRDen_US
cg.contributor.centerUniversity of Adelaide - Adelaideen_US
cg.contributor.centerThe University of Western Australia - UWAen_US
cg.contributor.centerSeoul National University - SNUen_US
cg.contributor.centerOsmania Universityen_US
cg.contributor.centerBeijing Genomics Institute- Shenzhen - BGI-Shenzhenen_US
cg.contributor.centerSouth Australian Research and Development Institute - SARDIen_US
cg.contributor.centerBGI‐Shenzhenen_US
cg.contributor.centerUniversity of Montpellieren_US
cg.contributor.centerIndian Council of Agricultural Research, Indian Institute of Pulses Research - ICAR-IIPRen_US
cg.contributor.centerUniversity of Agricultural Sciences–Bangaloreen_US
cg.contributor.centerIndian Council of Agricultural Research, Indian Agricultural Research Institute - ICAR-IARIen_US
cg.contributor.centerThe University of Western Australia, Faculty of Science, School of Plant Biologyen_US
cg.contributor.centerUniversity of California, Davis - UC Davisen_US
cg.contributor.centerUniversity of Missouri - MU USAen_US
cg.contributor.centerThe University of Western Australia, Institute of Agriculture - UWA - IOAen_US
cg.contributor.centerThe University of Vermont - UVMen_US
cg.contributor.crpCRP on Grain Legumes and Dryland Cereals - GLDCen_US
cg.contributor.funderCGIAR System Office - CGIAR - Sysen_US
cg.coverage.countryAUen_US
cg.coverage.countryCNen_US
cg.coverage.countryINen_US
cg.coverage.countryKEen_US
cg.coverage.countryMXen_US
cg.coverage.countryKRen_US
cg.coverage.regionAustralia and New Zealanden_US
cg.coverage.regionEastern Asiaen_US
cg.coverage.regionSouthern Asiaen_US
cg.coverage.regionEastern Africaen_US
cg.coverage.regionCentral Americaen_US
cg.creator.idThudi, Mahendar: 0000-0003-2851-6837en_US
cg.creator.idRoorkiwal, Manish: 0000-0001-6595-281Xen_US
cg.creator.idRathore, Abhishek: 0000-0001-6887-4095en_US
cg.creator.idGanga Rao, NVPR: 0000-0002-3278-3324en_US
cg.creator.idYves, Vigouroux: 0000-0002-8361-6040en_US
cg.date.embargo-end-dateTimelessen_US
cg.identifier.doihttps://dx.doi.org/10.1038/s41588-019-0401-3en_US
cg.isijournalISI Journalen_US
cg.issn1061-4036en_US
cg.issue51en_US
cg.journalNature Geneticsen_US
cg.subject.agrovocdomesticationen_US
cg.subject.agrovocagronomic traitsen_US
cg.volume5en_US
dc.contributorThudi, Mahendaren_US
dc.contributorRoorkiwal, Manishen_US
dc.contributorHe, Weimingen_US
dc.contributorUpadhyaya, Hari D.en_US
dc.contributorYang, Weien_US
dc.contributorBajaj, Prasaden_US
dc.contributorCubry, Philippeen_US
dc.contributorRathore, Abhisheken_US
dc.contributorJian, Jianboen_US
dc.contributorDoddamani, Dadakhalandaren_US
dc.contributorKhan, Aamiren_US
dc.contributorVanika, Gargen_US
dc.contributorChitikineni, Annapurnaen_US
dc.contributorXu, Dawenen_US
dc.contributorGaur, Pooranen_US
dc.contributorSingh, Narendra Pratapen_US
dc.contributorChaturvedi, Sushil k.en_US
dc.contributorGanga Rao, NVPRen_US
dc.contributorKrishnamurty, Lakshmananen_US
dc.contributorDixit, Girishen_US
dc.contributorFikre, Asnakeen_US
dc.contributorKimurto, Paulen_US
dc.contributorSreeman, Sheshshayeeen_US
dc.contributorChellapilla, Bharadwajen_US
dc.contributorTripathi, Shaileshen_US
dc.contributorWang, Junen_US
dc.contributorLee, Suk-Haen_US
dc.contributorEdwards, Daviden_US
dc.contributorKavi Kishor, Polavarapu B.en_US
dc.contributorPenmetsa, R. Varmaen_US
dc.contributorCrossa, Joseen_US
dc.contributorNguyen, Henry T.en_US
dc.contributorSiddique, Kadambot H Men_US
dc.contributorColmer, Timothyen_US
dc.contributorSutton, Timen_US
dc.contributorvon Wettberg, Eric J. B.en_US
dc.contributorYves, Vigourouxen_US
dc.contributorXu, Xunen_US
dc.contributorLiu, Xinen_US
dc.creatorVarshney, Rajeeven_US
dc.date.accessioned2020-02-11T11:30:31Z
dc.date.available2020-02-11T11:30:31Z
dc.description.abstractWe report a map of 4.97 million single-nucleotide polymorphisms of the chickpea from whole-genome resequencing of 429 lines sampled from 45 countries. We identified 122 candidate regions with 204 genes under selection during chickpea breeding. Our data suggest the Eastern Mediterranean as the primary center of origin and migration route of chickpea from the Mediterranean/Fertile Crescent to Central Asia, and probably in parallel from Central Asia to East Africa (Ethiopia) and South Asia (India). Genome-wide association studies identified 262 markers and several candidate genes for 13 traits. Our study establishes a foundation for large-scale characterization of germplasm and population genomics, and a resource for trait dissection, accelerating genetic gains in future chickpea breeding.en_US
dc.formatTXTen_US
dc.identifierhttps://mel.cgiar.org/dspace/limiteden_US
dc.identifier.citationRajeev Varshney, Mahendar Thudi, Manish Roorkiwal, Weiming He, Hari D. Upadhyaya, Wei Yang, Prasad Bajaj, Philippe Cubry, Abhishek Rathore, Jianbo Jian, Dadakhalandar Doddamani, Aamir Khan, Garg Vanika, Annapurna Chitikineni, Dawen Xu, Pooran Gaur, Narendra Pratap Singh, Sushil k. Chaturvedi, NVPR Ganga Rao, Lakshmanan Krishnamurty, Girish Dixit, Asnake Fikre, Paul Kimurto, Sheshshayee Sreeman, Bharadwaj Chellapilla, Shailesh Tripathi, Jun Wang, Suk-Ha Lee, David Edwards, Polavarapu B. Kavi Kishor, R. Varma Penmetsa, Jose Crossa, Henry T. Nguyen, Kadambot H M Siddique, Timothy Colmer, Tim Sutton, Eric J. B. von Wettberg, Vigouroux Yves, Xun Xu, Xin Liu. (29/4/2019). Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics, 5(51), pp. 857-864.en_US
dc.identifier.statusTimeless limited accessen_US
dc.identifier.urihttps://hdl.handle.net/20.500.11766/10716
dc.languageenen_US
dc.publisherNature Research (part of Springer Nature) (Fully open access journals)en_US
dc.rightsCopyrighted; all rights reserveden_US
dc.sourceNature Genetics;5,(2019) Pagination 857,864en_US
dc.subjectresequencingen_US
dc.subjectwhole-genome resequencingen_US
dc.subjectgenetic gainsen_US
dc.subjectchickpea breedingen_US
dc.subjectchickpea accessionsen_US
dc.subjectgenome diversityen_US
dc.subjectChickpeaen_US
dc.titleResequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traitsen_US
dc.typeJournal Articleen_US
dcterms.available2019-04-29en_US
dcterms.extent857-864en_US
mel.impact-factor27.125en_US

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