Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits
cg.contact | R.K.Varshney@CGIAR.ORG | en_US |
cg.contributor.center | International Crops Research Institute for the Semi-Arid Tropics - ICRISAT | en_US |
cg.contributor.center | International Maize and Wheat Improvement Center - CIMMYT | en_US |
cg.contributor.center | Ethiopian Institute of Agricultural Research - EIAR | en_US |
cg.contributor.center | Indian Council of Agricultural Research - ICAR | en_US |
cg.contributor.center | Egerton University | en_US |
cg.contributor.center | Institut de Recherche pour le Developpement - IRD | en_US |
cg.contributor.center | University of Adelaide - Adelaide | en_US |
cg.contributor.center | The University of Western Australia - UWA | en_US |
cg.contributor.center | Seoul National University - SNU | en_US |
cg.contributor.center | Osmania University | en_US |
cg.contributor.center | Beijing Genomics Institute- Shenzhen - BGI-Shenzhen | en_US |
cg.contributor.center | South Australian Research and Development Institute - SARDI | en_US |
cg.contributor.center | BGI‐Shenzhen | en_US |
cg.contributor.center | University of Montpellier | en_US |
cg.contributor.center | Indian Council of Agricultural Research, Indian Institute of Pulses Research - ICAR-IIPR | en_US |
cg.contributor.center | University of Agricultural Sciences–Bangalore | en_US |
cg.contributor.center | Indian Council of Agricultural Research, Indian Agricultural Research Institute - ICAR-IARI | en_US |
cg.contributor.center | The University of Western Australia, Faculty of Science, School of Plant Biology | en_US |
cg.contributor.center | University of California, Davis - UC Davis | en_US |
cg.contributor.center | University of Missouri - MU USA | en_US |
cg.contributor.center | The University of Western Australia, Institute of Agriculture - UWA - IOA | en_US |
cg.contributor.center | The University of Vermont - UVM | en_US |
cg.contributor.crp | CRP on Grain Legumes and Dryland Cereals - GLDC | en_US |
cg.contributor.funder | CGIAR System Office - CGIAR - Sys | en_US |
cg.coverage.country | AU | en_US |
cg.coverage.country | CN | en_US |
cg.coverage.country | IN | en_US |
cg.coverage.country | KE | en_US |
cg.coverage.country | MX | en_US |
cg.coverage.country | KR | en_US |
cg.coverage.region | Australia and New Zealand | en_US |
cg.coverage.region | Eastern Asia | en_US |
cg.coverage.region | Southern Asia | en_US |
cg.coverage.region | Eastern Africa | en_US |
cg.coverage.region | Central America | en_US |
cg.creator.id | Thudi, Mahendar: 0000-0003-2851-6837 | en_US |
cg.creator.id | Roorkiwal, Manish: 0000-0001-6595-281X | en_US |
cg.creator.id | Rathore, Abhishek: 0000-0001-6887-4095 | en_US |
cg.creator.id | Ganga Rao, NVPR: 0000-0002-3278-3324 | en_US |
cg.creator.id | Yves, Vigouroux: 0000-0002-8361-6040 | en_US |
cg.date.embargo-end-date | Timeless | en_US |
cg.identifier.doi | https://dx.doi.org/10.1038/s41588-019-0401-3 | en_US |
cg.isijournal | ISI Journal | en_US |
cg.issn | 1061-4036 | en_US |
cg.issue | 51 | en_US |
cg.journal | Nature Genetics | en_US |
cg.subject.agrovoc | domestication | en_US |
cg.subject.agrovoc | agronomic traits | en_US |
cg.volume | 5 | en_US |
dc.contributor | Thudi, Mahendar | en_US |
dc.contributor | Roorkiwal, Manish | en_US |
dc.contributor | He, Weiming | en_US |
dc.contributor | Upadhyaya, Hari D. | en_US |
dc.contributor | Yang, Wei | en_US |
dc.contributor | Bajaj, Prasad | en_US |
dc.contributor | Cubry, Philippe | en_US |
dc.contributor | Rathore, Abhishek | en_US |
dc.contributor | Jian, Jianbo | en_US |
dc.contributor | Doddamani, Dadakhalandar | en_US |
dc.contributor | Khan, Aamir | en_US |
dc.contributor | Vanika, Garg | en_US |
dc.contributor | Chitikineni, Annapurna | en_US |
dc.contributor | Xu, Dawen | en_US |
dc.contributor | Gaur, Pooran | en_US |
dc.contributor | Singh, Narendra Pratap | en_US |
dc.contributor | Chaturvedi, Sushil k. | en_US |
dc.contributor | Ganga Rao, NVPR | en_US |
dc.contributor | Krishnamurty, Lakshmanan | en_US |
dc.contributor | Dixit, Girish | en_US |
dc.contributor | Fikre, Asnake | en_US |
dc.contributor | Kimurto, Paul | en_US |
dc.contributor | Sreeman, Sheshshayee | en_US |
dc.contributor | Chellapilla, Bharadwaj | en_US |
dc.contributor | Tripathi, Shailesh | en_US |
dc.contributor | Wang, Jun | en_US |
dc.contributor | Lee, Suk-Ha | en_US |
dc.contributor | Edwards, David | en_US |
dc.contributor | Kavi Kishor, Polavarapu B. | en_US |
dc.contributor | Penmetsa, R. Varma | en_US |
dc.contributor | Crossa, Jose | en_US |
dc.contributor | Nguyen, Henry T. | en_US |
dc.contributor | Siddique, Kadambot H M | en_US |
dc.contributor | Colmer, Timothy | en_US |
dc.contributor | Sutton, Tim | en_US |
dc.contributor | von Wettberg, Eric J. B. | en_US |
dc.contributor | Yves, Vigouroux | en_US |
dc.contributor | Xu, Xun | en_US |
dc.contributor | Liu, Xin | en_US |
dc.creator | Varshney, Rajeev | en_US |
dc.date.accessioned | 2020-02-11T11:30:31Z | |
dc.date.available | 2020-02-11T11:30:31Z | |
dc.description.abstract | We report a map of 4.97 million single-nucleotide polymorphisms of the chickpea from whole-genome resequencing of 429 lines sampled from 45 countries. We identified 122 candidate regions with 204 genes under selection during chickpea breeding. Our data suggest the Eastern Mediterranean as the primary center of origin and migration route of chickpea from the Mediterranean/Fertile Crescent to Central Asia, and probably in parallel from Central Asia to East Africa (Ethiopia) and South Asia (India). Genome-wide association studies identified 262 markers and several candidate genes for 13 traits. Our study establishes a foundation for large-scale characterization of germplasm and population genomics, and a resource for trait dissection, accelerating genetic gains in future chickpea breeding. | en_US |
dc.format | TXT | en_US |
dc.identifier | https://mel.cgiar.org/dspace/limited | en_US |
dc.identifier.citation | Rajeev Varshney, Mahendar Thudi, Manish Roorkiwal, Weiming He, Hari D. Upadhyaya, Wei Yang, Prasad Bajaj, Philippe Cubry, Abhishek Rathore, Jianbo Jian, Dadakhalandar Doddamani, Aamir Khan, Garg Vanika, Annapurna Chitikineni, Dawen Xu, Pooran Gaur, Narendra Pratap Singh, Sushil k. Chaturvedi, NVPR Ganga Rao, Lakshmanan Krishnamurty, Girish Dixit, Asnake Fikre, Paul Kimurto, Sheshshayee Sreeman, Bharadwaj Chellapilla, Shailesh Tripathi, Jun Wang, Suk-Ha Lee, David Edwards, Polavarapu B. Kavi Kishor, R. Varma Penmetsa, Jose Crossa, Henry T. Nguyen, Kadambot H M Siddique, Timothy Colmer, Tim Sutton, Eric J. B. von Wettberg, Vigouroux Yves, Xun Xu, Xin Liu. (29/4/2019). Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics, 5(51), pp. 857-864. | en_US |
dc.identifier.status | Timeless limited access | en_US |
dc.identifier.uri | https://hdl.handle.net/20.500.11766/10716 | |
dc.language | en | en_US |
dc.publisher | Nature Research (part of Springer Nature) (Fully open access journals) | en_US |
dc.rights | Copyrighted; all rights reserved | en_US |
dc.source | Nature Genetics;5,(2019) Pagination 857,864 | en_US |
dc.subject | resequencing | en_US |
dc.subject | whole-genome resequencing | en_US |
dc.subject | genetic gains | en_US |
dc.subject | chickpea breeding | en_US |
dc.subject | chickpea accessions | en_US |
dc.subject | genome diversity | en_US |
dc.subject | Chickpea | en_US |
dc.title | Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits | en_US |
dc.type | Journal Article | en_US |
dcterms.available | 2019-04-29 | en_US |
dcterms.extent | 857-864 | en_US |
mel.impact-factor | 27.125 | en_US |