The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

cg.contactweijianz@fafu.edu.cnen_US
cg.contributor.centerThe University of Western Australia - UWAen_US
cg.contributor.centerOsmania Universityen_US
cg.contributor.centerChinese Academy of Agricultural Sciences, Henan Academy of Agricultural Sciences - CAAS - HNAASen_US
cg.contributor.centerGuangxi Academy of Agricultural Sciences - GXAASen_US
cg.contributor.centerFujian Agriculture and Forestry University, College of Plant Protection - FAFU - CoPRen_US
cg.contributor.centerFujian Agriculture and Forestry University - FAFUen_US
cg.contributor.centerNextomics Biosciences Instituteen_US
cg.contributor.centerUniversity of Florida - UFen_US
cg.contributor.centerInternational Crops Research Institute for the Semi-Arid Tropics - ICRISATen_US
cg.contributor.centerNational Cheng Kung Universityen_US
cg.contributor.centerShandong Academy of Agricultural Sciencesen_US
cg.contributor.centerUniversity of Arizona - Arizonaen_US
cg.contributor.centerNorth China University of Science and Technologyen_US
cg.contributor.centerUnited States Department of Agriculture, Agricultural Research Service - USDA-ARSen_US
cg.contributor.centerChinese Academy of Agricultural Sciences, Oil Crops Research Institute - CAAS-OCRIen_US
cg.contributor.centerKey Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciencesen_US
cg.contributor.centerShenzhen Universityen_US
cg.contributor.centerShandong Peanut Research Instituteen_US
cg.contributor.centerTuskegee Universityen_US
cg.contributor.centerZhongkai University of Agriculture and Engineeringen_US
cg.contributor.centerNational Tsing Hua Universityen_US
cg.contributor.centerUniversity of Georgia - UGAen_US
cg.contributor.crpCRP on Grain Legumes and Dryland Cereals - GLDCen_US
cg.contributor.funderCGIAR System Office - CGIAR - Sysen_US
cg.coverage.countryAUen_US
cg.coverage.countryCNen_US
cg.coverage.countryINen_US
cg.coverage.countryTWen_US
cg.coverage.regionAustralia and New Zealanden_US
cg.coverage.regionEastern Asiaen_US
cg.coverage.regionSouthern Asiaen_US
cg.creator.idPandey, Manish K: 0000-0002-4101-6530en_US
cg.identifier.doihttps://dx.doi.org/10.1038/s41588-019-0402-2en_US
cg.isijournalISI Journalen_US
cg.issn1061-4036en_US
cg.issue51en_US
cg.journalNature Geneticsen_US
cg.subject.agrovoccrop improvementen_US
cg.subject.agrovocgenomicsen_US
cg.subject.agrovocgeneticsen_US
cg.volume5en_US
dc.contributorChen, Huaen_US
dc.contributorYang, Mengen_US
dc.contributorWang, Jianpingen_US
dc.contributorPandey, Manish Ken_US
dc.contributorZhang, Chongen_US
dc.contributorChang, Wen-Chien_US
dc.contributorZhang, Liangshengen_US
dc.contributorZhang, Xingtanen_US
dc.contributorTang, Ronghuaen_US
dc.contributorVanika, Gargen_US
dc.contributorWang, Xingjunen_US
dc.contributorTang, Haibaoen_US
dc.contributorChow, Chi-Ngaen_US
dc.contributorWang, Jinpengen_US
dc.contributorDeng, Yeen_US
dc.contributorWang, Depengen_US
dc.contributorKhan, Aamiren_US
dc.contributorYang, Qiangen_US
dc.contributorCai, Tiechengen_US
dc.contributorBajaj, Prasaden_US
dc.contributorWu, Kangchengen_US
dc.contributorGuo, Baozhuen_US
dc.contributorZhang, Xinyouen_US
dc.contributorLi, Jingjingen_US
dc.contributorLiang, Fanen_US
dc.contributorHu, Jiangen_US
dc.contributorLiao, Boshouen_US
dc.contributorLiu, Shengyien_US
dc.contributorChitikineni, Annapurnaen_US
dc.contributorYan, Hansongen_US
dc.contributorZheng, Yixiongen_US
dc.contributorShan, Shihuaen_US
dc.contributorLiu, Qinzhengen_US
dc.contributorXie, Dongyangen_US
dc.contributorWang, Zhenyien_US
dc.contributorKhan, Shahiden_US
dc.contributorAli, Niazen_US
dc.contributorZhao, Chuanzhien_US
dc.contributorLi, Xinguoen_US
dc.contributorLuo, Ziliangen_US
dc.contributorZhang, Shubiaoen_US
dc.contributorZhuang, Ruirongen_US
dc.contributorPeng, Zeen_US
dc.contributorWang, Shuaiyanen_US
dc.contributorMamadou, Gandekaen_US
dc.contributorZhuang, Yuhuien_US
dc.contributorZhao, Zifanen_US
dc.contributorYu, Weichangen_US
dc.contributorXiong, Faqianen_US
dc.contributorQuan, Weipengen_US
dc.contributorYuan, Meien_US
dc.contributorLi, Yuen_US
dc.contributorZou, Huasongen_US
dc.contributorXia, Hanen_US
dc.contributorZha, Lien_US
dc.contributorFan, Junpengen_US
dc.contributorYu, Jigaoen_US
dc.contributorXie, Wenpingen_US
dc.contributorYuan, Jiaqingen_US
dc.contributorChen, Kunen_US
dc.contributorZhao, Shanshanen_US
dc.contributorChu, Wentingen_US
dc.contributorChen, Yutingen_US
dc.contributorSun, Pengchuanen_US
dc.contributorMeng, Fanboen_US
dc.contributorZhuo, Taoen_US
dc.contributorZhao, Yuhaoen_US
dc.contributorLi, Chunjuanen_US
dc.contributorHe, Guohaoen_US
dc.contributorZhao, Yonglien_US
dc.contributorWang, Congcongen_US
dc.contributorKavi Kishor, Polavarapu B.en_US
dc.contributorPan, Rong-Longen_US
dc.contributorPaterson, Andrew H.en_US
dc.contributorwang, xiyinen_US
dc.contributorMing, Rayen_US
dc.contributorVarshney, Rajeeven_US
dc.creatorZhuang, Weijianen_US
dc.date.accessioned2020-02-11T05:24:33Z
dc.date.available2020-02-11T05:24:33Z
dc.description.abstractHigh oil and protein content make tetraploid peanut a leading oil and food legume. Here we report a high-quality peanut genome sequence, comprising 2.54 Gb with 20 pseudomolecules and 83,709 protein-coding gene models. We characterize gene functional groups implicated in seed size evolution, seed oil content, disease resistance and symbiotic nitrogen fixation. The peanut B subgenome has more genes and general expression dominance, temporally associated with long-terminal-repeat expansion in the A subgenome that also raises questions about the A-genome progenitor. The polyploid genome provided insights into the evolution of Arachis hypogaea and other legume chromosomes. Resequencing of 52 accessions suggests that independent domestications formed peanut ecotypes. Whereas 0.42–0.47 million years ago (Ma) polyploidy constrained genetic variation, the peanut genome sequence aids mapping and candidate-gene discovery for traits such as seed size and color, foliar disease resistance and others, also providing a cornerstone for functional genomics and peanut improvement.en_US
dc.formatTXTen_US
dc.identifierhttps://mel.cgiar.org/reporting/downloadmelspace/hash/a59f47d0a84fff9399ed797dc94026e7/v/51e7c2636ecb787b9f4edc6094a0e9cben_US
dc.identifier.citationWeijian Zhuang, Hua Chen, Meng Yang, Jianping Wang, Manish K Pandey, Chong Zhang, Wen-Chi Chang, Liangsheng Zhang, Xingtan Zhang, Ronghua Tang, Garg Vanika, Xingjun Wang, Haibao Tang, Chi-Nga Chow, Jinpeng Wang, Ye Deng, Depeng Wang, Aamir Khan, Qiang Yang, Tiecheng Cai, Prasad Bajaj, Kangcheng Wu, Baozhu Guo, Xinyou Zhang, Jingjing Li, Fan Liang, Jiang Hu, Boshou Liao, Shengyi Liu, Annapurna Chitikineni, Hansong Yan, Yixiong Zheng, Shihua Shan, Qinzheng Liu, Dongyang Xie, Zhenyi Wang, Shahid Khan, Niaz Ali, Chuanzhi Zhao, Xinguo Li, Ziliang Luo, Shubiao Zhang, Ruirong Zhuang, Ze Peng, Shuaiyan Wang, Gandeka Mamadou, Yuhui Zhuang, Zifan Zhao, Weichang Yu, Faqian Xiong, Weipeng Quan, Mei Yuan, Yu Li, Huasong Zou, Han Xia, Li Zha, Junpeng Fan, Jigao Yu, Wenping Xie, Jiaqing Yuan, Kun Chen, Shanshan Zhao, Wenting Chu, Yuting Chen, Pengchuan Sun, Fanbo Meng, Tao Zhuo, Yuhao Zhao, Chunjuan Li, Guohao He, Yongli Zhao, Congcong Wang, Polavarapu B. Kavi Kishor, Rong-Long Pan, Andrew H. Paterson, xiyin wang, Ray Ming, Rajeev Varshney. (1/5/2019). The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics, 5(51), pp. 865-876.en_US
dc.identifier.statusOpen accessen_US
dc.identifier.urihttps://hdl.handle.net/20.500.11766/10708
dc.languageenen_US
dc.publisherNature Research (part of Springer Nature) (Fully open access journals)en_US
dc.rightsCC-BY-NC-4.0en_US
dc.sourceNature Genetics;5,(2019) Pagination 865,876en_US
dc.subjectgroundnuten_US
dc.subjectpeanuten_US
dc.subjecttetraploid peanuten_US
dc.subjectpeanut genomeen_US
dc.subjectlegume karyotype evolutionen_US
dc.subjectpeanut improvementen_US
dc.subjectpolyploid genome evolutionen_US
dc.subjectoil and protein contenten_US
dc.subjectGroundnuten_US
dc.titleThe genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domesticationen_US
dc.typeJournal Articleen_US
dcterms.available2019-05-01en_US
dcterms.extent865-876en_US
mel.impact-factor27.125en_US

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