Whole-genome resource sequences of 57 indigenous Ethiopian goats
cg.contact | J.Mwacharo@cgiar.org | en_US |
cg.contributor.center | International Center for Agricultural Research in the Dry Areas - ICARDA | en_US |
cg.contributor.center | International Livestock Research Institute - ILRI | en_US |
cg.contributor.center | University of Sydney | en_US |
cg.contributor.center | Addis Ababa University - AAU | en_US |
cg.contributor.center | Tigray Agricultural Research Institute - TARI | en_US |
cg.contributor.center | University of Nottingham, School of Life Sciences - UoN UK - School of Life Sciences | en_US |
cg.contributor.center | Scotland's Rural College - SRUC | en_US |
cg.contributor.center | Misurata University | en_US |
cg.contributor.center | CAAS‑ILRI Joint Laboratory On Livestock and Forage Genetic Resources, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences (CAAS) | en_US |
cg.contributor.center | Washington University in St. Louis - WashU | en_US |
cg.contributor.center | University of Liverpool - Liverpool | en_US |
cg.contributor.crp | Resilient Agrifood Systems - RAFS | en_US |
cg.contributor.funder | International Center for Agricultural Research in the Dry Areas - ICARDA | en_US |
cg.contributor.funder | International Livestock Research Institute - ILRI | en_US |
cg.contributor.funder | Addis Ababa University - AAU | en_US |
cg.contributor.funder | CGIAR Research Program on Livestock Agri-Food Systems - Livestock | en_US |
cg.contributor.funder | Tigray Agricultural Research Institute - TARI | en_US |
cg.contributor.funder | Biotechnology and Biological Sciences Research Council - BBSRC | en_US |
cg.contributor.funder | CGIAR Trust Fund | en_US |
cg.contributor.funder | University of Liverpool - Liverpool | en_US |
cg.contributor.initiative | Sustainable Animal Productivity | en_US |
cg.contributor.project-lead-institute | International Center for Agricultural Research in the Dry Areas - ICARDA | en_US |
cg.coverage.country | ET | en_US |
cg.coverage.region | Eastern Africa | en_US |
cg.creator.id | Tarekegn, Getinet: 0000-0001-7221-2473 | en_US |
cg.creator.id | Hanotte, Olivier: 0000-0002-2877-4767 | en_US |
cg.creator.id | Mwacharo, Joram: 0000-0001-6981-8140 | en_US |
cg.identifier.doi | https://dx.doi.org/10.1038/s41597-024-02973-2 | en_US |
cg.isijournal | ISI Journal | en_US |
cg.journal | Scientific Data | en_US |
cg.subject.actionArea | Resilient Agrifood Systems | en_US |
cg.subject.agrovoc | goats | en_US |
cg.subject.agrovoc | ethiopia | en_US |
cg.subject.agrovoc | goats | en_US |
cg.subject.impactArea | Climate adaptation and mitigation | en_US |
cg.subject.impactArea | Environmental health and biodiversity | en_US |
cg.subject.sdg | SDG 1 - No poverty | en_US |
cg.subject.sdg | SDG 13 - Climate action | en_US |
cg.volume | 11 | en_US |
dc.contributor | Belay, Gurja | en_US |
dc.contributor | Nigussie, Helen | en_US |
dc.contributor | Jianlin, Han | en_US |
dc.contributor | Tijjani, Abdulfatai | en_US |
dc.contributor | Ahbara, Abulgasim | en_US |
dc.contributor | Tarekegn, Getinet | en_US |
dc.contributor | Woldekiros, Helina S. | en_US |
dc.contributor | Mor, Siobhan | en_US |
dc.contributor | Dobney, Keith | en_US |
dc.contributor | Lebrasseur, Ophelie | en_US |
dc.contributor | Hanotte, Olivier | en_US |
dc.contributor | Mwacharo, Joram | en_US |
dc.creator | Belay, Shumuye | en_US |
dc.date.accessioned | 2024-09-05T18:40:34Z | |
dc.date.available | 2024-09-05T18:40:34Z | |
dc.description.abstract | Domestic goats are distributed worldwide, with approximately 35% of the one billion world goat population occurring in Africa. Ethiopia has 52.5 million goats, ~99.9% of which are considered indigenous landraces deriving from animals introduced to the Horn of Africa in the distant past by nomadic herders. They have continued to be managed by smallholder farmers and semi-mobile pastoralists throughout the region. We report here 57 goat genomes from 12 Ethiopian goat populations sampled from different agro-climates. The data were generated through sequencing DNA samples on the Illumina NovaSeq 6000 platform at a mean depth of 9.71x and 150 bp pair-end reads. In total, ~2 terabytes of raw data were generated, and 99.8% of the clean reads mapped successfully against the goat reference genome assembly at a coverage of 99.6%. About 24.76 million SNPs were generated. These SNPs can be used to study the population structure and genome dynamics of goats at the country, regional, and global levels to shed light on the species’ evolutionary trajectory. | en_US |
dc.format | en_US | |
dc.identifier | https://mel.cgiar.org/reporting/downloadmelspace/hash/37797efe67d774cee1c3d9f2f23222cd | en_US |
dc.identifier.citation | Shumuye Belay, Gurja Belay, Helen Nigussie, Han Jianlin, Abdulfatai Tijjani, Abulgasim Ahbara, Getinet Tarekegn, Helina S. Woldekiros, Siobhan Mor, Keith Dobney, Ophelie Lebrasseur, Olivier Hanotte, Joram Mwacharo. (29/1/2024). Whole-genome resource sequences of 57 indigenous Ethiopian goats. Scientific Data, 11. | en_US |
dc.identifier.status | Open access | en_US |
dc.identifier.uri | https://hdl.handle.net/20.500.11766/69499 | |
dc.language | en | en_US |
dc.publisher | NATURE RESEARCH | en_US |
dc.rights | CC-BY-4.0 | en_US |
dc.source | Scientific Data;11,(2024) | en_US |
dc.subject | goat genomes | en_US |
dc.title | Whole-genome resource sequences of 57 indigenous Ethiopian goats | en_US |
dc.type | Journal Article | en_US |
dcterms.available | 2024-01-29 | en_US |
mel.impact-factor | 5.8 | en_US |
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