Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers
cg.contact | Baozhu.Guo@ars.usda.gov | en_US |
cg.contributor.center | University of Georgia - UGA | en_US |
cg.contributor.center | International Crops Research Institute for the Semi-Arid Tropics - ICRISAT | en_US |
cg.contributor.center | Chinese Academy of Agricultural Sciences, Henan Academy of Agricultural Sciences - CAAS - HNAAS | en_US |
cg.contributor.center | Shandong Peanut Research Institute | en_US |
cg.contributor.center | Florida Agricultural and Mechanical University - FAMU | en_US |
cg.contributor.center | Fujian Agriculture and Forestry University, College of Plant Protection - FAFU - CoPR | en_US |
cg.contributor.center | United States Department of Agriculture, Agricultural Research Service - USDA-ARS | en_US |
cg.contributor.center | AgResearch | en_US |
cg.contributor.center | Fujian Agriculture and Forestry University - FAFU | en_US |
cg.contributor.crp | CGIAR Research Program on Grain Legumes - GL | en_US |
cg.contributor.funder | Not Applicable | en_US |
cg.coverage.country | CN | en_US |
cg.coverage.country | IN | en_US |
cg.coverage.country | US | en_US |
cg.coverage.region | Eastern Asia | en_US |
cg.coverage.region | Southern Asia | en_US |
cg.coverage.region | Northern America | en_US |
cg.date.embargo-end-date | 2116-05-31 | en_US |
cg.isijournal | ISI Journal | en_US |
cg.issn | 1672-9072 | en_US |
cg.issue | 5 | en_US |
cg.journal | Journal of Integrative Plant Biology | en_US |
cg.subject.agrovoc | agriculture | en_US |
cg.subject.agrovoc | breeding | en_US |
cg.subject.agrovoc | population structure | en_US |
cg.subject.agrovoc | arachis hypogaea | en_US |
cg.volume | 58 | en_US |
dc.contributor | Khera, Pawan | en_US |
dc.contributor | Huang, Bingyan | en_US |
dc.contributor | Yuan, Mei | en_US |
dc.contributor | Katam, Ramesh | en_US |
dc.contributor | Zhuang, Weijian | en_US |
dc.contributor | Harris-Shultz, Karen R | en_US |
dc.contributor | Moore, Kim M. | en_US |
dc.contributor | Culbreath, Albert K. | en_US |
dc.contributor | Zhang, Xinyou | en_US |
dc.contributor | Varshney, Rajeev | en_US |
dc.contributor | Xie, Lianhui | en_US |
dc.contributor | Guo, Baozhu | en_US |
dc.creator | Wang, Hui | en_US |
dc.date.accessioned | 2017-04-26T21:16:19Z | |
dc.date.available | 2017-04-26T21:16:19Z | |
dc.description.abstract | Cultivated peanut is grown worldwide as richsource of oil and protein. A broad genetic base is needed for cultivar improvement. The objectives of this study were to develop highly informative simple sequence repeat (SSR) markers and to assess the genetic diversity and population structure of peanut cultivars and breeding lines from different breeding programs in China, India and the US. A total of 111 SSR markers were selected for this study, resulting in a total of 472 alleles. The mean values of gene diversity and polymorphic information content (PIC) were 0.480 and 0.429, respectively. Country-wise analysis revealed that alleles per locus in three countries were similar. The mean gene diversity in the US, China and India was 0.363, 0.489 and 0.47 with an average PIC of 0.323, 0.43 and 0.412, respectively. Genetic analysis using the STRUCTURE divided these peanut lines into two populations (P1, P2), which was consistent with the dendrogram based on genetic distance (G1, G2) and the clustering of principal component analysis. The groupings were related to peanut market types and the geographic origin with a few admixtures. The results could be used by breeding programs to assess the genetic diversity of breeding materials to broaden the genetic base and for molecular genetics studies. | en_US |
dc.format | en_US | |
dc.identifier | https://mel.cgiar.org/dspace/limited | en_US |
dc.identifier | http://oar.icrisat.org/id/eprint/9700 | en_US |
dc.identifier.citation | Hui Wang, Pawan Khera, Bingyan Huang, Mei Yuan, Ramesh Katam, Weijian Zhuang, Karen R Harris-Shultz, Kim M. Moore, Albert K. Culbreath, Xinyou Zhang, Rajeev Varshney, Lianhui Xie, Baozhu Guo. (31/5/2016). Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers. Journal of Integrative Plant Biology, 58 (5), pp. 452-465. | en_US |
dc.identifier.status | Limited access | en_US |
dc.identifier.uri | https://hdl.handle.net/20.500.11766/6893 | |
dc.language | en | en_US |
dc.publisher | Wiley | en_US |
dc.rights | CC-BY-NC-4.0 | en_US |
dc.source | Journal of Integrative Plant Biology;58,(2016) Pagination 452,465 | en_US |
dc.subject | simple sequence repeat | en_US |
dc.subject | genetic diversity | en_US |
dc.subject | Peanut | en_US |
dc.title | Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers | en_US |
dc.type | Journal Article | en_US |
dcterms.available | 2016-05-31 | en_US |
dcterms.extent | 452-465 | en_US |
mel.impact-factor | 3.670 | en_US |